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Streamed Clustering of Lightning Mapping Data in Python Using sklearn; SciPy 2013 Presentation

Summary

Authors: Bruning, Eric C., Texas Tech University

Track: GIS - Geospatial Data Analysis

Lightning mapping at radio frequencies (here with VHF Lightning Mapping Array data) is typically performed by a time-of-arrival source retrieval method. Thereafter, it is common to cluster the located sources into flash-level entities (often comprised of 10^2 - 10^3 sources) using space and time separation thresholds. A previously-used clustering algorithm was a one-off implementation in Fortran, and was designed without reference to the machine learning literature. This study replaces the previous algorithm, which had been wrapped into the Python-based lmatools workflow, with the general-purpose DBSCAN implementation in Python's sklearn package. The legacy code included substantial, file format-specific, I/O boilerplate. The new code clarifies the boundary between algorithm and I/O, and promotes clean integration with the rest of the lmatools infrastructure, aiding maintainability.

A chunked, streamed processing method was developed to account for continuous data rates that may exceed 10^5 four-coordinate (space and time) source vectors per minute. The chunking method exploits known physical limits to lightning flash duration, allowing the N^2 implementation of DBSCAN in sklearn to achieve real-time processing rates within available memory. The streaming technique is expected to be useful in future work as a flexible building block for end-to-end real-time and post-processing scripts and interactive analysis tools.

The algorithm is expected to find immediate use in our analysis of data from the NSF-sponsored Deep Convective Clouds and Chemistry campaign. The open nature of the underlying clustering libraries promotes code reuse by other research groups. Accounts of source-to-flash clustering in the literature are complemented by the availability of this open, objective reference implementation for clustering of lightning mapping datasets.